View samples in the objects of "Project"

Source: R/project.R

This method can be used to view the samples slot of the "Project" class

sampleTable(object)

# S4 method for Project
sampleTable(object)

Arguments

object

an object of "Project"

Value

a data.table with the with metadata about samples

Methods (by class)

  • sampleTable(Project): extract sample table from a "Project"

Examples

projectConfig = system.file("extdata", "example_peps-master",
"example_amendments1", "project_config.yaml", package="pepr")
p=Project(projectConfig)
#> Loading config file: /home/runner/work/_temp/Library/pepr/extdata/example_peps-master/example_amendments1/project_config.yaml
#>   amendments: newLib,newLib2
sampleTable(p)
#>    sample_name protocol organism time                       file_path
#> 1:      pig_0h     RRBS      pig    0  /data/lab/project/pig_0h.fastq
#> 2:      pig_1h     RRBS      pig    1  /data/lab/project/pig_1h.fastq
#> 3:     frog_0h     RRBS     frog    0 /data/lab/project/frog_0h.fastq
#> 4:     frog_1h     RRBS     frog    1 /data/lab/project/frog_1h.fastq