This method can be used to view the config slot of the "Project" class

config(object)

# S4 method for Project
config(object)

Arguments

object

an object of "Project"

Value

project config

Methods (by class)

Examples

projectConfig = system.file("extdata", "example_peps-master", "example_amendments1", "project_config.yaml", package="pepr") p=Project(projectConfig)
#> Loading config file: /Users/runner/work/_temp/Library/pepr/extdata/example_peps-master/example_amendments1/project_config.yaml
#> amendments: newLib,newLib2
config(p)
#> Config object. Class: Config #> pep_version: 2.0.0 #> sample_table: #> /Users/runner/work/_temp/Library/pepr/extdata/example_peps-master/example_amendments1/sample_table.csv #> output_dir: /Users/runner/hello_looper_results #> sample_modifiers: #> derive: #> attributes: file_path #> sources: #> source1: /data/lab/project/{organism}_{time}h.fastq #> source2: #> /path/from/collaborator/weirdNamingScheme_{external_id}.fastq #> project_modifiers: #> amend: #> newLib: #> sample_table: sample_table_newLib.csv #> newLib2: #> sample_table: sample_table_newLib2.csv #> name: example_amendments1